{{Rsnum
|rsid=1007738
|Gene=CKAP5
|Chromosome=11
|position=46827809
|Orientation=plus
|GMAF=0.4187
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(A;A)
|geno2=(A;G)
|geno3=(G;G)
|Gene_s=CKAP5
}}{{ population diversity
| geno1=(A;A)
| geno2=(A;G)
| geno3=(G;G)
| CEU | 65.5 | 31.9 | 2.7
| HCB | 25.2 | 50.4 | 24.4
| JPT | 18.2 | 41.8 | 40.0
| YRI | 9.5 | 44.9 | 45.6
| ASW | 28.1 | 54.4 | 17.5
| CHB | 25.2 | 50.4 | 24.4
| CHD | 15.7 | 49.1 | 35.2
| GIH | 57.4 | 37.6 | 5.0
| LWK | 19.4 | 49.1 | 31.5
| MEX | 34.5 | 50.0 | 15.5
| MKK | 27.1 | 49.0 | 23.9
| TSI | 65.7 | 31.4 | 2.9
| HapMapRevision=28
}}
{{PMID Auto GWAS
|PMID=19079262
|Trait=Bone mineral density (hip)
|Title=New sequence variants associated with bone mineral density
|RiskAllele=A
|Pval=7E-7
|OR=0.08
|ORtxt=[0.05-0.11] SD decrease
}}

{{PharmGKB
|RSID=rs1007738
|Name_s=
|Gene_s=CKAP5
|Feature=
|Evidence=PubMed ID:19079262; Web Resource:http://www.genome.gov/gwastudies/
|Annotation=GWAS results: New sequence variants associated with bone mineral density. (Initial Sample Size: 6,865 individuals; Replication Sample Size: 8,510 individuals); (Region: 11p11.2; Reported Gene(s): LRP4; Risk Allele: rs1007738-A); (p-value= 0.0000007).This variant is associated with Bone mineral density (hip).
|Drugs=
|Drug Classes=
|Diseases=Bone Diseases; Bone Diseases, Metabolic
|Curation Level=Non-Curated
|PharmGKB Accession ID=PA164740134
}}

{{PMID|19629617|OA=1
}} Replication study of candidate genes/loci associated with osteoporosis based on genome-wide screening.

{{GET Evidence
|impact=pathogenic
|qualified_impact=Insufficiently evaluated pathogenic
|inheritance=unknown
|quality_scores=Array
|dbsnp_id=rs1007738
|overall_frequency_n=81
|overall_frequency_d=128
|overall_frequency=0.632812
|n_genomes=44
|n_genomes_annotated=0
|n_haplomes=65
|n_articles=0
|n_articles_annotated=0
|in_gwas=Y
|in_pharmgkb=Y
|autoscore=2
|webscore=N
}}

{{on chip | 23andMe v1}}
{{on chip | 23andMe v2}}
{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | Affy GenomeWide 6}}
{{on chip | HumanOmni1Quad}}
{{on chip | Illumina Human 1M}}