{{Rsnum
|rsid=10758669
|Chromosome=9
|position=4981602
|Orientation=plus
|GMAF=0.3085
|Assembly=GRCh37.p2
|GenomeBuild=37.2
|dbSNPBuild=134
|geno1=(A;A)
|geno2=(A;C)
|geno3=(C;C)
}}
{{ population diversity
| geno1=(A;A)
| geno2=(A;C)
| geno3=(C;C)
| CEU | 37.5 | 51.8 | 10.7
| HCB | 44.4 | 45.9 | 9.8
| JPT | 38.9 | 47.8 | 13.3
| YRI | 81.0 | 17.7 | 1.4
| ASW | 68.4 | 29.8 | 1.8
| CHB | 44.4 | 45.9 | 9.8
| CHD | 43.9 | 37.4 | 18.7
| GIH | 37.6 | 51.5 | 10.9
| LWK | 77.3 | 20.9 | 1.8
| MEX | 32.8 | 50.0 | 17.2
| MKK | 54.8 | 41.9 | 3.2
| TSI | 39.2 | 48.0 | 12.7
| HapMapRevision=28
}}
{{PMID Auto GWAS
|PMID=18587394
|Trait=Crohn's disease
|Title=Genome-wide assocation defines more than 30 distinct susceptibility loci for Crohn's disease
|RiskAllele=C
|Pval=3E-9
|OR=1.12
|ORtxt=[NR]
|OA=1
}}

{{PMID Auto
|PMID=20109474
|Title=Genetic factors in chronic inflammation: single nucleotide polymorphisms in the STAT-JAK pathway, susceptibility to DNA damage and Crohn's disease in a New Zealand population
}}

{{PMID Auto GWAS
|PMID=20228799
|Trait=Ulcerative colitis
|Title=Genome-wide association identifies multiple ulcerative colitis susceptibility loci
|RiskAllele=C
|Pval=0.000001
|OR=1.22
|ORtxt=[NR]
|OA=1
}}

{{PMID Auto GWAS
|PMID=21297633
|Trait=None
|Title=Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47
|RiskAllele=C
|Pval=2E-25
|OR=1.1700
|ORtxt=[1.12-1.21]
|OA=1
}}

{{PMID Auto
|PMID=22205606
|Title=JAK2 and STAT3 polymorphisms in a Han Chinese Population with Behcet's disease
}}

{{PMID Auto
|PMID=22269120
|Title=Investigation of JAK2, STAT3 and CCR6 polymorphisms and their gene-gene interactions in inflammatory bowel disease
}}

{{PMID Auto
|PMID=18006699
|Title=Host genetic variation contributes to phenotypic diversity in myeloproliferative disorders.
}}

{{PMID Auto
|PMID=19068216
|Title=Investigation of Crohn's disease risk loci in ulcerative colitis further defines their molecular relationship.
|OA=1
}}

{{PMID Auto
|PMID=21304977
|Title=An investigation of genome-wide studies reported susceptibility loci for ulcerative colitis shows limited replication in north Indians.
|OA=1
}}

{{PMID Auto
|PMID=22065112
|Title=The JAK2 variant rs10758669 in Crohn's disease: altering the intestinal barrier as one mechanism of action.
}}

{{PMID Auto
|PMID=21102463
|Title=Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.
|OA=1
}}

{{GET Evidence
|impact=pathogenic
|qualified_impact=Insufficiently evaluated pathogenic
|inheritance=unknown
|quality_scores=Array
|dbsnp_id=rs10758669
|overall_frequency_n=85
|overall_frequency_d=128
|overall_frequency=0.664062
|n_genomes=44
|n_genomes_annotated=0
|n_haplomes=62
|n_articles=0
|n_articles_annotated=0
|in_gwas=Y
|autoscore=1
|webscore=N
}}

{{PMID Auto GWAS
  |PMID=23128233
  |Trait=Inflammatory bowel disease
  |Title=Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
  |RiskAllele=C
  |Pval=8E-45
  |OR=1.17
  |ORtxt=[1.139-1.209]
  |OA=1
}}

{{PMID Auto
|PMID=23611997
|Title=JAK1, but not JAK2 and STAT3, confers susceptibility to Vogt-Koyanagi-Harada (VKH) syndrome in a Han Chinese population
}}

{{PMID Auto
|PMID=24385239
|Title=JAK2 rs10758669 Polymorphisms and Susceptibility to Ulcerative Colitis and Crohn's Disease: A Meta-analysis
}}

{{on chip | 23andMe v1}}
{{on chip | 23andMe v2}}
{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | HumanOmni1Quad}}
{{on chip | Illumina Human 1M}}