{{Rsnum
|rsid=12046117
|Gene=VTCN1
|Chromosome=1
|position=117208743
|Orientation=plus
|GMAF=0.202
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(C;C)
|geno2=(C;T)
|geno3=(T;T)
|Gene_s=VTCN1
}}{{ population diversity
| geno1=(C;C)
| geno2=(C;T)
| geno3=(T;T)
| CEU | 82.8 | 17.2 | 0.0
| HCB | 45.5 | 47.7 | 6.8
| JPT | 69.8 | 27.9 | 2.3
| YRI | 61.7 | 35.0 | 3.3
| ASW | 0.0 | 0.0 | 0.0
| CHB | 45.5 | 47.7 | 6.8
| CHD | 0.0 | 0.0 | 0.0
| GIH | 0.0 | 0.0 | 0.0
| LWK | 0.0 | 0.0 | 0.0
| MEX | 0.0 | 0.0 | 0.0
| MKK | 0.0 | 0.0 | 0.0
| TSI | 0.0 | 0.0 | 0.0
| HapMapRevision=28
}}{{PMID Auto GWAS
|PMID=19116933
|Trait=Juvenile idiopathic arthritis
|Title=Identification of a novel susceptibility locus for juvenile idiopathic arthritis by genome-wide association analysis
|RiskAllele=
|Pval=0.000001
|OR=1.58
|ORtxt=[1.29-1.94]
|OA=1
}}

{{PharmGKB
|RSID=rs12046117
|Name_s=
|Gene_s=VTCN1, CD101
|Feature=
|Evidence=PubMed ID:19116933; Web Resource:http://www.genome.gov/gwastudies/
|Annotation=GWAS results: Identification of a novel susceptibility locus for juvenile idiopathic arthritis by genome-wide association analysis. (Initial Sample Size: 279 cases, 184 controls; Replication Sample Size: up to 654 cases, 1,847 controls); (Region: 1p13.1; Reported Gene(s): VTCN1; Risk Allele: rs12046117-?); (p-value= 0.000001).This variant is associated with Juvenile idiopathic arthritis.
|Drugs=
|Drug Classes=
|Diseases=Arthritis
|Curation Level=Non-Curated
|PharmGKB Accession ID=PA164740092
}}

{{GET Evidence
|impact=pathogenic
|qualified_impact=Insufficiently evaluated pathogenic
|inheritance=unknown
|quality_scores=Array
|dbsnp_id=rs12046117
|overall_frequency_n=25
|overall_frequency_d=128
|overall_frequency=0.195312
|n_genomes=15
|n_genomes_annotated=0
|n_haplomes=18
|n_articles=0
|n_articles_annotated=0
|in_gwas=Y
|in_pharmgkb=Y
|autoscore=2
|webscore=N
}}

{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}