{{Rsnum
|rsid=1217414
|Gene=PTPN22
|Chromosome=1
|position=113870045
|Orientation=minus
|GMAF=0.3095
|Gene_s=MIR223,PTPN22
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(C;C)
|geno2=(C;T)
|geno3=(T;T)
}}{{ population diversity
| geno1=(C;C)
| geno2=(C;T)
| geno3=(T;T)
| CEU | 54.9 | 38.9 | 6.2
| HCB | 79.6 | 20.4 | 0.0
| JPT | 73.5 | 25.7 | 0.9
| YRI | 6.1 | 40.1 | 53.7
| ASW | 10.5 | 43.9 | 45.6
| CHB | 79.6 | 20.4 | 0.0
| CHD | 93.6 | 6.4 | 0.0
| GIH | 52.5 | 40.6 | 6.9
| LWK | 9.1 | 38.2 | 52.7
| MEX | 77.6 | 19.0 | 3.4
| MKK | 19.2 | 47.4 | 33.3
| TSI | 57.8 | 38.2 | 3.9
| HapMapRevision=28
}}{{PMID Auto
|PMID=23950893
|Title=PTPN22 Association in Systemic Lupus Erythematosus (SLE) with Respect to Individual Ancestry and Clinical Sub-Phenotypes
|OA=1
}}

{{PMID Auto
|PMID=16175503
|Title=PTPN22 genetic variation: evidence for multiple variants associated with rheumatoid arthritis.
|OA=1
}}

{{PMID Auto
|PMID=18341666
|Title=Polymorphisms in the PTPN22 region are associated with psoriasis of early onset.
|OA=1
}}

{{PMID Auto
|PMID=18466461
|Title=Meta-genetic association of rheumatoid arthritis and PTPN22 using PedGenie 2.1.
|OA=1
}}

{{PMID Auto
|PMID=18466531
|Title=Case-control association analysis of rheumatoid arthritis with candidate genes using related cases.
|OA=1
}}

{{PMID Auto
|PMID=18466575
|Title=Comparison of the power of haplotype-based versus single- and multilocus association methods for gene x environment (gene x sex) interactions and application to gene x smoking and gene x sex interactions in rheumatoid arthritis.
|OA=1
}}

{{PMID Auto
|PMID=19956096
|Title=rs2476601 T allele (R620W) defines high-risk PTPN22 type I diabetes-associated haplotypes with preliminary evidence for an additional protective haplotype.
|OA=1
}}

{{PMID Auto
|PMID=19956101
|Title=Overview of the Rapid Response data.
|OA=1
}}

{{PMID Auto
|PMID=19956106
|Title=Analysis of 19 genes for association with type I diabetes in the Type I Diabetes Genetics Consortium families.
|OA=1
}}

{{PMID Auto
|PMID=20444268
|Title=Peripheral blood gene expression patterns discriminate among chronic inflammatory diseases and healthy controls and identify novel targets.
|OA=1
}}

{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | Affy GenomeWide 6}}
{{on chip | Illumina Human 1M}}