{{Rsnum
|rsid=12532
|Gene=MSX1
|Chromosome=4
|position=4863419
|Orientation=plus
|GMAF=0.4298
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(A;A)
|geno2=(A;G)
|geno3=(G;G)
|Gene_s=MSX1
}}{{ population diversity
| geno1=(A;A)
| geno2=(A;G)
| geno3=(G;G)
| CEU | 59.3 | 33.6 | 7.1
| HCB | 16.1 | 40.9 | 43.1
| JPT | 27.4 | 38.1 | 34.5
| YRI | 32.7 | 51.0 | 16.3
| ASW | 35.1 | 36.8 | 28.1
| CHB | 16.1 | 40.9 | 43.1
| CHD | 11.0 | 46.8 | 42.2
| GIH | 45.5 | 47.5 | 6.9
| LWK | 32.7 | 50.0 | 17.3
| MEX | 20.7 | 43.1 | 36.2
| MKK | 39.1 | 44.9 | 16.0
| TSI | 53.9 | 41.2 | 4.9
| HapMapRevision=28
}}{{PMID Auto
|PMID=20635363
|Title=Parent-of-origin effects for MSX1 in a Chilean population with nonsyndromic cleft lip/palate
}}

{{PMID Auto
|PMID=20450679
|Title=[Msh homebox-1 polymorphisms and susceptibility to 198 sporadic tooth agenesis: a case-control study].
}}

{{PMID Auto
|PMID=21689018
|Title=Association between MSX1 variants and oral clefts in Han Chinese in western China.
}}

{{PMID Auto
|PMID=23231047
|Title=Association Between CDH1 and MSX1 Gene Polymorphisms and the Risk of Nonsyndromic Cleft Lip and/or Cleft Palate in a Southeast Iranian Population
}}

{{PMID Auto
|PMID=23580168
|Title=Association between MSX1 SNPs and Nonsyndromic Cleft Lip with or without Cleft Palate in the Korean Population
|OA=1
}}

{{PMID Auto
|PMID=24603642
|Title=A miRNA-binding-site SNP of MSX1 is Associated with NSOC Susceptibility
}}

{{PMID Auto
|PMID=23549991
|Title=Candidate gene studies in hypodontia suggest role for FGF3.
}}

{{on chip | 23andMe v1}}
{{on chip | 23andMe v2}}
{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | Illumina Human 1M}}