{{Rsnum
|rsid=12760457
|Gene=PTPN22
|Chromosome=1
|position=113847126
|Orientation=plus
|GMAF=0.1676
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(C;C)
|geno2=(C;T)
|geno3=(T;T)
|Gene_s=PTPN22,RP5-1073O3.2
}}{{ population diversity
| geno1=(C;C)
| geno2=(C;T)
| geno3=(T;T)
| CEU | 51.3 | 38.9 | 9.7
| HCB | 86.1 | 13.1 | 0.7
| JPT | 82.3 | 16.8 | 0.9
| YRI | 99.3 | 0.7 | 0.0
| ASW | 93.0 | 7.0 | 0.0
| CHB | 86.1 | 13.1 | 0.7
| CHD | 83.5 | 15.6 | 0.9
| GIH | 31.7 | 54.5 | 13.9
| LWK | 97.3 | 2.7 | 0.0
| MEX | 58.6 | 32.8 | 8.6
| MKK | 89.1 | 10.3 | 0.6
| TSI | 43.6 | 43.6 | 12.9
| HapMapRevision=28
}}{{PMID Auto
|PMID=20615141
|Title=Association of the Protein Tyrosine Phosphatase Nonreceptor 22 Haplotypes with Autoimmune Thyroid Disease in the Japanese Population
}}

{{PMID Auto
|PMID=16175503
|Title=PTPN22 genetic variation: evidence for multiple variants associated with rheumatoid arthritis.
|OA=1
}}

{{PMID Auto
|PMID=18341666
|Title=Polymorphisms in the PTPN22 region are associated with psoriasis of early onset.
|OA=1
}}

{{PMID Auto
|PMID=18466461
|Title=Meta-genetic association of rheumatoid arthritis and PTPN22 using PedGenie 2.1.
|OA=1
}}

{{PMID Auto
|PMID=18466531
|Title=Case-control association analysis of rheumatoid arthritis with candidate genes using related cases.
|OA=1
}}

{{PMID Auto
|PMID=18466575
|Title=Comparison of the power of haplotype-based versus single- and multilocus association methods for gene x environment (gene x sex) interactions and application to gene x smoking and gene x sex interactions in rheumatoid arthritis.
|OA=1
}}

{{on chip | Illumina Human 1M}}