{{Rsnum
|rsid=1464510
|Gene=LPP
|Chromosome=3
|position=188394766
|Orientation=minus
|GMAF=0.4532
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(G;G)
|geno2=(G;T)
|geno3=(T;T)
|Gene_s=LPP
}}{{ population diversity
| geno1=(G;G)
| geno2=(G;T)
| geno3=(T;T)
| CEU | 29.2 | 50.4 | 20.4
| HCB | 22.6 | 48.9 | 28.5
| JPT | 25.7 | 44.2 | 30.1
| YRI | 66.7 | 28.6 | 4.8
| ASW | 42.1 | 45.6 | 12.3
| CHB | 22.6 | 48.9 | 28.5
| CHD | 11.0 | 45.9 | 43.1
| GIH | 18.8 | 54.5 | 26.7
| LWK | 61.8 | 33.6 | 4.5
| MEX | 17.2 | 48.3 | 34.5
| MKK | 66.0 | 26.9 | 7.1
| TSI | 35.3 | 45.1 | 19.6
| HapMapRevision=28
}}

{{GWAS Summary
|SNP=rs1464510
|PubMedID=18311140
|Condition=Celiac disease
|Gene=LPP
|Risk Allele=A
|pValue=5.00E-009
|OR=1.23
|95CI=1.15-1.32
|OA=1
}}

{{omim
|desc=CELIAC DISEASE, SUSCEPTIBILITY TO, 11; CELIAC11
|id=612009
|rsnum=1464510
}}
{{PMID Auto
|PMID=19693089
|Title=Four novel coeliac disease regions replicated in an association study of a Swedish-Norwegian family cohort
}}

{{PharmGKB
|RSID=rs1464510
|Name_s=
|Gene_s=LPP
|Feature=
|Evidence=PubMed ID:18311140; Web Resource:http://www.genome.gov/gwastudies/
|Annotation=GWAS Results: Newly identified genetic risk variants for celiac disease related to the immune response (Initial Sample Size: 767 cases, 1,422 controls; Replication Sample Size: 1,643 cases, 3,406 controls; Risk Allele: rs1464510-A).
|Drugs=
|Drug Classes=
|Diseases=Celiac Disease
|Curation Level=Non-Curated
|PharmGKB Accession ID=PA162356753
}}

{{PMID Auto GWAS
|PMID=20190752
|Trait=Celiac disease
|Title=Multiple common variants for celiac disease influencing immune gene expression
|RiskAllele=A
|Pval=3E-40
|OR=1.29
|ORtxt=[1.25-1.34]
|OA=1
}}
{{PMID Auto GWAS
|PMID=20410501
|Trait=Vitiligo
|Title=Variant of TYR and Autoimmunity Susceptibility Loci in Generalized Vitiligo
|RiskAllele=T
|Pval=1E-11
|OR=1.31
|ORtxt=[1.21-1.41]
|OA=1
}}

{{PMID Auto
|PMID=22087237
|Title=Improving the estimation of celiac disease sibling risk by non-HLA genes
|OA=1
}}

{{PMID|18853133|OA=1
}} Gene variants influencing measures of inflammation or predisposing to autoimmune and inflammatory diseases are not associated with the risk of type 2 diabetes.

{{PMID|19073967|OA=1
}} Shared and distinct genetic variants in type 1 diabetes and celiac disease.

{{PMID|20647273|OA=1
}} Investigation of type 1 diabetes and coeliac disease susceptibility loci for association with juvenile idiopathic arthritis.

{{GET Evidence
|impact=pathogenic
|qualified_impact=Insufficiently evaluated pathogenic
|inheritance=unknown
|quality_scores=Array
|dbsnp_id=rs1464510
|overall_frequency_n=43
|overall_frequency_d=128
|overall_frequency=0.335938
|n_genomes=33
|n_genomes_annotated=0
|n_haplomes=41
|n_articles=0
|n_articles_annotated=0
|in_gwas=Y
|in_pharmgkb=Y
|autoscore=2
|webscore=N
}}

{{PMID Auto
|PMID=22922229
|Title=Seven newly identified loci for autoimmune thyroid disease.
|OA=1
}}

{{on chip | 23andMe v1}}
{{on chip | 23andMe v2}}
{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | HumanOmni1Quad}}
{{on chip | Illumina Human 1M}}