{{Rsnum
|rsid=1551398
|Chromosome=8
|position=125527809
|Orientation=minus
|GMAF=0.4311
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(C;C)
|geno2=(C;T)
|geno3=(T;T)
}}{{ population diversity
| geno1=(C;C)
| geno2=(C;T)
| geno3=(T;T)
| CEU | 12.4 | 51.3 | 36.3
| HCB | 47.4 | 40.9 | 11.7
| JPT | 33.6 | 52.2 | 14.2
| YRI | 85.7 | 13.6 | 0.7
| ASW | 64.9 | 31.6 | 3.5
| CHB | 47.4 | 40.9 | 11.7
| CHD | 45.0 | 41.3 | 13.8
| GIH | 32.7 | 53.5 | 13.9
| LWK | 71.8 | 27.3 | 0.9
| MEX | 20.7 | 48.3 | 31.0
| MKK | 62.8 | 34.0 | 3.2
| TSI | 16.7 | 47.1 | 36.3
| HapMapRevision=28
}}
{{PMID Auto GWAS
|PMID=18587394
|Trait=Crohn's disease
|Title=Genome-wide assocation defines more than 30 distinct susceptibility loci for Crohn's disease
|RiskAllele=A
|Pval=5.0000000000000001E-9
|OR=1.08
|ORtxt=[NR]
|OA=1
}}

DeCode reports that [[rs1551398]] is associated with susceptibility to [[Crohn's disease]]. {{PMID|18587394|OA=1
}}

{{PMID Auto
|PMID=19068216
|Title=Investigation of Crohn's disease risk loci in ulcerative colitis further defines their molecular relationship.
|OA=1
}}

{{PMID Auto
|PMID=21304977
|Title=An investigation of genome-wide studies reported susceptibility loci for ulcerative colitis shows limited replication in north Indians.
|OA=1
}}

{{GET Evidence
|impact=pathogenic
|qualified_impact=Insufficiently evaluated pathogenic
|inheritance=unknown
|quality_scores=Array
|dbsnp_id=rs1551398
|overall_frequency_n=50
|overall_frequency_d=128
|overall_frequency=0.390625
|n_genomes=31
|n_genomes_annotated=0
|n_haplomes=38
|n_articles=0
|n_articles_annotated=0
|in_gwas=Y
|autoscore=1
|webscore=N
}}

{{PMID Auto
|PMID=23543094
|Title=Testing for associations between loci and environmental gradients using latent factor mixed models.
|OA=1
}}

{{on chip | 23andMe v1}}
{{on chip | 23andMe v2}}
{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | HumanOmni1Quad}}
{{on chip | Illumina Human 1M}}