{{Rsnum
|rsid=1553316
|Gene=HAVCR1
|Chromosome=5
|position=157052498
|Orientation=plus
|GMAF=0.1001
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(C;C)
|geno2=(C;T)
|geno3=(T;T)
|Gene_s=HAVCR1
}}{{ population diversity
| geno1=(C;C)
| geno2=(C;T)
| geno3=(T;T)
| CEU | 74.3 | 24.8 | 0.9
| HCB | 95.6 | 4.4 | 0.0
| JPT | 97.3 | 2.7 | 0.0
| YRI | 81.0 | 18.4 | 0.7
| ASW | 86.0 | 14.0 | 0.0
| CHB | 95.6 | 4.4 | 0.0
| CHD | 99.1 | 0.9 | 0.0
| GIH | 89.1 | 10.9 | 0.0
| LWK | 74.5 | 24.5 | 0.9
| MEX | 82.8 | 17.2 | 0.0
| MKK | 82.7 | 14.7 | 2.6
| TSI | 68.6 | 29.4 | 2.0
| HapMapRevision=28
}}{{PMID Auto
|PMID=20070602
|Title=Fine mapping of T-cell immunoglobulin mucin domain gene 1 failed to detect a significant association with multiple sclerosis
}}

{{GET Evidence
|gene=HAVCR1
|aa_change=Leu179Pro
|aa_change_short=L179P
|impact=not reviewed
|qualified_impact=Insufficiently evaluated not reviewed
|inheritance=unknown
|quality_scores=Array
|dbsnp_id=rs1553316
|overall_frequency_n=8931
|overall_frequency_d=10452
|overall_frequency=0.854478
|n_genomes=39
|n_genomes_annotated=0
|n_haplomes=70
|n_articles=0
|n_articles_annotated=0
|nblosum100=7
|autoscore=0
|webscore=N
}}
{{on chip | Affy GenomeWide 6}}
{{on chip | FTDNA2}}
{{on chip | FTDNA}}
{{on chip | HumanOmni1Quad}}