{{Rsnum
|rsid=1566734
|Gene=PTPRJ
|Chromosome=11
|position=48123823
|Orientation=minus
|ReferenceAllele=A
|MissenseAllele=C
|GMAF=0.1667
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(G;G)
|geno2=(G;T)
|geno3=(T;T)
|Gene_s=PTPRJ
}}{{ population diversity
| geno1=(G;G)
| geno2=(G;T)
| geno3=(T;T)
| CEU | 1.8 | 22.1 | 76.1
| HCB | 6.6 | 25.5 | 67.9
| JPT | 4.4 | 40.7 | 54.9
| YRI | 0.7 | 15.6 | 83.7
| ASW | 3.5 | 28.1 | 68.4
| CHB | 6.6 | 25.5 | 67.9
| CHD | 5.5 | 41.3 | 53.2
| GIH | 6.9 | 36.6 | 56.4
| LWK | 0.0 | 15.5 | 84.5
| MEX | 1.7 | 20.7 | 77.6
| MKK | 1.3 | 16.7 | 82.1
| TSI | 6.9 | 38.2 | 54.9
| HapMapRevision=28
}}

NOTE: the OMIM entry cited below refers to a somatic mutation, not a germline SNP

{{omim
|desc=COLON CANCER, SOMATIC
|id=600925
|rsnum=1566734
|variant=0002
}}

{{Venter SNP
|rsid=1566734
|allele=C
|frequency=0.142
|uid=1103649680136
|type=heterozygous_SNP
|hugo=PTPRJ
|ensembl gene=ENSG00000149177
|ensembl transcript=ENST00000278456
|sift=TOLERATED
|disease=Defects in PTPRJ are found in cancers of colon, lung, and breast.
}}

{{ClinVar
|rsid=1566734
|Reversed=1
|FwdREF=T
|FwdALT=G
|REF=A
|ALT=C
|RSPOS=48145375
|CHROM=11
|GMAF=0.1667
|dbSNPBuildID=88
|SSR=0
|SAO=1
|VP=0x050168000000150517110101
|GENEINFO=PTPRJ:5795
|GENE_NAME=PTPRJ
|GENE_ID=5795
|WGT=0
|VC=SNV
|CLNALLE=1
|CLNHGVS=NC_000011.9:g.48145375A>C
|CLNORIGIN=1
|CLNSIG=255
|Tags=RV;PM;PMC;SLO;VLD;G5;HD;GNO;KGPhase1;KGPROD;OTHERKG;PH3;LSD;OM
|CAF=0.8333; 0.1667
|CLNACC=RCV000009227.1
|CLNDBN=Colon cancer, somatic
|CLNSRC=OMIM Allelic Variant
|CLNSRCID=600925.0002
|COMMON=1
|Disease=Colon cancer
}}

{{PMID|18843023}} PTPRJ haplotypes and colorectal cancer risk.

{{GET Evidence
|gene=PTPRJ
|aa_change=Gln276Pro
|aa_change_short=Q276P
|impact=not reviewed
|qualified_impact=Insufficiently evaluated not reviewed
|inheritance=other
|quality_scores=Array
|dbsnp_id=rs1566734
|overall_frequency_n=1596
|overall_frequency_d=10758
|overall_frequency=0.148355
|n_genomes=15
|n_genomes_annotated=0
|n_haplomes=18
|n_articles=2
|n_articles_annotated=2
|qualityscore_in_silico=1
|qualitycomment_in_silico=Y
|in_omim=Y
|pph2_score=0.007
|nblosum100=4
|autoscore=2
|webscore=N
|summary_short=This variant is associated with susceptibility to various cancers.
}}

{{PMID Auto
|PMID=23341091
|Title=High-resolution loss of heterozygosity screening implicates PTPRJ as a potential tumor suppressor gene that affects susceptibility to non-hodgkin's lymphoma
}}

{{on chip | 23andMe v1}}
{{on chip | 23andMe v2}}
{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | Affy GenomeWide 6}}
{{on chip | FTDNA2}}
{{on chip | FTDNA}}
{{on chip | HumanOmni1Quad}}
{{on chip | Illumina Human 1M}}