{{Rsnum
|rsid=1635852
|Gene=JAZF1
|Chromosome=7
|position=28149792
|Orientation=plus
|GMAF=0.3586
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(C;C)
|geno2=(C;T)
|geno3=(T;T)
|Gene_s=JAZF1
}}{{ population diversity
| geno1=(C;C)
| geno2=(C;T)
| geno3=(T;T)
| CEU | 28.6 | 44.6 | 26.8
| HCB | 7.3 | 32.1 | 60.6
| JPT | 2.7 | 37.2 | 60.2
| YRI | 5.4 | 39.5 | 55.1
| ASW | 5.3 | 31.6 | 63.2
| CHB | 7.3 | 32.1 | 60.6
| CHD | 4.6 | 29.4 | 66.1
| GIH | 5.0 | 31.7 | 63.4
| LWK | 6.4 | 30.9 | 62.7
| MEX | 10.3 | 53.4 | 36.2
| MKK | 7.1 | 37.8 | 55.1
| TSI | 31.4 | 42.2 | 26.5
| HapMapRevision=28
}}{{PMID Auto GWAS
|PMID=18952825
|Trait=Height
|Title=Common variants in the JAZF1 gene associated with height identified by linkage and genome-wide association analysis
|RiskAllele=A
|Pval=9E-10
|OR=0.25
|ORtxt= [0.17-0.33] cm taller
|OA=1
}}

{{omim
|desc=STATURE QUANTITATIVE TRAIT LOCUS 17; STQTL17
|id=612737
|rsnum=1635852
}}

{{PharmGKB
|RSID=rs1635852
|Name_s=
|Gene_s=JAZF1
|Feature=
|Evidence=PubMed ID:18952825; Web Resource:http://www.genome.gov/gwastudies/
|Annotation=GWAS results: Common variants in the JAZF1 gene associated with height identified by linkage and genome-wide association analysis. (Initial Sample Size: 3,925 individuals; Replication Sample Size: 38,091 individuals); (Region: 7p15.1; Reported Gene(s): JAZF1; Risk Allele: rs1635852-A); (p-value= 0.0000000009).This variant is associated with Height.
|Drugs=
|Drug Classes=
|Diseases=
|Curation Level=Non-Curated
|PharmGKB Accession ID=PA164740796
}}

{{PMID Auto
|PMID=18535201
|Title=A genome-wide scan for common genetic variants with a large influence on warfarin maintenance dose.
|OA=1
}}

{{PMID Auto
|PMID=18694974
|Title=Predicting type 2 diabetes based on polymorphisms from genome-wide association studies: a population-based study.
|OA=1
}}

{{PMID Auto
|PMID=19096518
|Title=Novel association of HK1 with glycated hemoglobin in a non-diabetic population: a genome-wide evaluation of 14,618 participants in the Women's Genome Health Study.
|OA=1
}}

{{PMID Auto
|PMID=19341491
|Title=Genome-based prediction of common diseases: methodological considerations for future research.
|OA=1
}}

{{PMID Auto
|PMID=19474294
|Title=Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.
|OA=1
}}

{{PMID Auto
|PMID=21379322
|Title=Risk alleles for systemic lupus erythematosus in a large case-control collection and associations with clinical subphenotypes.
|OA=1
}}

{{PMID Auto
|PMID=21408207
|Title=Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.
|OA=1
}}

{{GET Evidence
|impact=pathogenic
|qualified_impact=Insufficiently evaluated pathogenic
|inheritance=unknown
|quality_scores=Array
|dbsnp_id=rs1635852
|overall_frequency_n=45
|overall_frequency_d=128
|overall_frequency=0.351562
|n_genomes=29
|n_genomes_annotated=0
|n_haplomes=38
|n_articles=0
|n_articles_annotated=0
|in_gwas=Y
|in_pharmgkb=Y
|autoscore=2
|webscore=N
}}

{{PMID Auto GWAS
  |PMID=23740937
  |Trait=Systemic lupus erythematosus and Systemic sclerosis
  |Title=A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.
  |RiskAllele=
  |Pval=2E-8
  |OR=1.14
  |ORtxt=[NR]
  }}

{{PMID Auto
|PMID=23328127
|Title=Allele-specific transcriptional activity at type 2 diabetes-associated single nucleotide polymorphisms in regions of pancreatic islet open chromatin at the JAZF1 locus.
|OA=1
}}

{{on chip | 23andMe v1}}
{{on chip | 23andMe v2}}
{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | Illumina Human 1M}}