{{Rsnum
|rsid=217086
|Gene=CTSC
|Chromosome=11
|position=88312415
|Orientation=plus
|ReferenceAllele=C
|MissenseAllele=T
|GMAF=0.08815
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(A;A)
|geno2=(A;G)
|geno3=(G;G)
}}{{ population diversity
| geno1=(A;A)
| geno2=(A;G)
| geno3=(G;G)
| CEU | 1.8 | 30.4 | 67.9
| HCB | 0.0 | 0.0 | 100.0
| JPT | 0.0 | 0.0 | 100.0
| YRI | 0.0 | 12.3 | 87.7
| ASW | 0.0 | 17.9 | 82.1
| CHB | 0.0 | 0.0 | 100.0
| CHD | 0.0 | 1.9 | 98.1
| GIH | 0.0 | 7.9 | 92.1
| LWK | 0.0 | 14.7 | 85.3
| MEX | 1.8 | 14.0 | 84.2
| MKK | 1.9 | 25.6 | 72.4
| TSI | 6.9 | 23.8 | 69.3
| HapMapRevision=28
}}

{{Venter SNP
|rsid=217086
|allele=G
|frequency=0.15
|uid=1103649747764
|type=heterozygous_SNP
|hugo=CTSC
|ensembl gene=ENSG00000109861
|ensembl transcript=ENST00000227266
|sift=TOLERATED
|disease=Defects in CTSC are a cause of juvenile periodontitis (JPD) (MIM:170650); also known as prepubertal periodontitis (PPP). JPD is characterized by severe and protracted gingival infections, leading to tooth loss. JPD inheritance is autosomal dominant.
}}

{{GET Evidence
|gene=CTSC
|aa_change=Ile153Thr
|aa_change_short=I153T
|impact=not reviewed
|qualified_impact=Insufficiently evaluated not reviewed
|inheritance=unknown
|quality_scores=Array
|dbsnp_id=rs217086
|overall_frequency_n=9295
|overall_frequency_d=10758
|overall_frequency=0.864008
|n_genomes=56
|n_genomes_annotated=0
|n_haplomes=101
|n_articles=0
|n_articles_annotated=0
|nblosum100=3
|autoscore=0
|webscore=N
}}

{{ClinVar
|ALT=G
|CAF=0.08815; 0.9118
|CHROM=11
|CLNALLE=1
|CLNHGVS=NC_000011.9:g.88045583A>G
|CLNORIGIN=2
|CLNSIG=1
|COMMON=1
|FwdALT=G
|FwdREF=A
|REF=A
|RSPOS=88045583
|Reversed=0
|SAO=3
|SSR=0
|Tags=PM;SLO;VLD;G5;HD;GNO;KGPhase1;KGPilot123;KGPROD;OTHERKG;PH3;LSD;OM
|VC=SNV
|VP=0x05016000000115051f110121
|WGT=1
|dbSNPBuildID=79
|rsid=217086
}}

{{on chip | 23andMe v1}}
{{on chip | 23andMe v2}}
{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | FTDNA2}}
{{on chip | FTDNA}}
{{on chip | Illumina Human 1M}}