{{Rsnum
|rsid=2188962
|Gene=IBD5
|Chromosome=5
|position=132435113
|Orientation=plus
|GMAF=0.1896
|Gene_s=C5orf56
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(C;C)
|geno2=(C;T)
|geno3=(T;T)
}}{{ population diversity
| geno1=(C;C)
| geno2=(C;T)
| geno3=(T;T)
| CEU | 30.4 | 58.9 | 10.7
| HCB | 99.3 | 0.7 | 0.0
| JPT | 100.0 | 0.0 | 0.0
| YRI | 98.6 | 1.4 | 0.0
| ASW | 77.2 | 22.8 | 0.0
| CHB | 99.3 | 0.7 | 0.0
| CHD | 97.2 | 2.8 | 0.0
| GIH | 81.2 | 17.8 | 1.0
| LWK | 95.5 | 4.5 | 0.0
| MEX | 51.7 | 39.7 | 8.6
| MKK | 94.2 | 5.1 | 0.6
| TSI | 42.2 | 45.1 | 12.7
| HapMapRevision=28
}}{{PMID Auto GWAS
|PMID=18587394
|Trait=Crohn's disease
|Title=Genome-wide assocation defines more than 30 distinct susceptibility loci for [[Crohn's disease]]
|RiskAllele=T
|Pval=2.0000000000000001E-18
|OR=1.25
|ORtxt=[NR]
|OA=1
}}

{{omim
|desc=INFLAMMATORY BOWEL DISEASE 5; [[IBD5]]
|id=606348
|rsnum=2188962
}}

{{PMID Auto GWAS
|PMID=20570966
|Trait=Crohn's disease
|Title=Fucosyltransferase 2(FUT2) Non-Secretor Status is associated with [[Crohn's Disease]]
|RiskAllele=
|Pval=1E-7
|OR=1.36
|ORtxt=[1.21-1.52]
|OA=1
}}

{{PMID Auto
|PMID=21061378
|Title=Two independent genetic factors responsible for the associations of the [[IBD5]] locus with [[Crohn's disease]] in the Czech population
}}

{{PMID Auto
|PMID=21674708
|Title=Two independent genetic factors responsible for the associations of the IBD5 locus with Crohn's disease in the Czech population
}}

{{PMID|19408013|OA=1
}} Strategies and issues in the detection of pathway enrichment in genome-wide association studies.

{{PMID|19557189|OA=1
}} Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions.

{{PMID|20031576|OA=1
}} Association of novel genetic Loci with circulating fibrinogen levels: a genome-wide association study in 6 population-based cohorts.

{{PMID|20369022|OA=1
}} Candidate causal regulatory effects by integration of expression QTLs with complex trait genetic associations.

{{PMID|21304977|OA=1
}} An investigation of genome-wide studies reported susceptibility loci for ulcerative colitis shows limited replication in north Indians.

{{GET Evidence
|impact=pathogenic
|qualified_impact=Insufficiently evaluated pathogenic
|inheritance=unknown
|quality_scores=Array
|dbsnp_id=rs2188962
|overall_frequency_n=25
|overall_frequency_d=128
|overall_frequency=0.195312
|n_genomes=15
|n_genomes_annotated=0
|n_haplomes=18
|n_articles=0
|n_articles_annotated=0
|in_gwas=Y
|autoscore=1
|webscore=N
}}

{{PMID Auto GWAS
  |PMID=23128233
  |Trait=Inflammatory bowel disease
  |Title=Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
  |RiskAllele=T
  |Pval=1E-52
  |OR=1.16
  |ORtxt=[1.125-1.191]
  |OA=1
}}

{{on chip | 23andMe v1}}
{{on chip | 23andMe v2}}
{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | HumanOmni1Quad}}
{{on chip | Illumina Human 1M}}