{{Rsnum
|rsid=2228226
|Gene=GLI1
|Chromosome=12
|position=57472038
|Orientation=plus
|GMAF=0.4036
|Gene_s=ARHGAP9,GLI1
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(C;C)
|geno2=(C;G)
|geno3=(G;G)
}}{{ population diversity
| geno1=(C;C)
| geno2=(C;G)
| geno3=(G;G)
| CEU | 50.8 | 40.0 | 9.2
| HCB | 4.4 | 51.1 | 44.4
| JPT | 40.9 | 38.6 | 20.5
| YRI | 49.2 | 41.3 | 9.5
| ASW | 0.0 | 0.0 | 0.0
| CHB | 4.4 | 51.1 | 44.4
| CHD | 0.0 | 0.0 | 0.0
| GIH | 0.0 | 0.0 | 0.0
| LWK | 0.0 | 0.0 | 0.0
| MEX | 0.0 | 0.0 | 0.0
| MKK | 0.0 | 0.0 | 0.0
| TSI | 0.0 | 0.0 | 0.0
| HapMapRevision=28
}}{{PMID Auto
|PMID=20445566
|Title=Evidence that glioma-associated oncogene homolog 1 is not a universal risk gene for inflammatory bowel disease in Caucasians
}}

{{PMID Auto
|PMID=18817904
|Title=Japanese population structure, based on SNP genotypes from 7003 individuals compared to other ethnic groups: effects on population-based association studies.
|OA=1
}}

{{PMID Auto
|PMID=19071955
|Title=Analysis of germline GLI1 variation implicates hedgehog signalling in the regulation of intestinal inflammatory pathways.
|OA=1
}}

{{GET Evidence
|gene=GLI1
|aa_change=Glu1059Gln
|aa_change_short=E1059Q
|impact=not reviewed
|qualified_impact=Insufficiently evaluated not reviewed
|inheritance=unknown
|quality_scores=Array
|dbsnp_id=rs2228226
|n_genomes=1
|n_genomes_annotated=0
|n_haplomes=1
|n_articles=0
|n_articles_annotated=0
|nblosum100=-2
|autoscore=1
|webscore=N
}}

{{PMID Auto
|PMID=24470513
|Title=A functional germline variant in GLI1 implicates Hedgehog signaling in clinical outcome of stage II and III colon carcinoma patients
}}
{{on chip | HumanOmni1Quad}}