{{Rsnum
|rsid=3099844
|Chromosome=6
|position=31481199
|Orientation=plus
|GMAF=0.0854
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(A;A)
|geno2=(A;C)
|geno3=(C;C)
}}{{ population diversity
| geno1=(A;A)
| geno2=(A;C)
| geno3=(C;C)
| CEU | 0.9 | 19.5 | 79.6
| HCB | 0.7 | 13.1 | 86.1
| JPT | 0.9 | 1.8 | 97.3
| YRI | 2.0 | 22.4 | 75.5
| ASW | 1.8 | 15.8 | 82.5
| CHB | 0.7 | 13.1 | 86.1
| CHD | 0.0 | 8.3 | 91.7
| GIH | 0.0 | 8.9 | 91.1
| LWK | 4.5 | 25.5 | 70.0
| MEX | 3.4 | 1.7 | 94.8
| MKK | 0.6 | 19.2 | 80.1
| TSI | 0.0 | 18.6 | 81.4
| HapMapRevision=28
}}{{PMID Auto
|PMID=19944697
|Title=Genome-wide association analysis in [[primary sclerosing cholangitis]]
}}

{{PMID Auto
|PMID=20662065
|Title=Genome-wide association study of cardiac manifestations of neonatal lupus identifies candidate loci at 6p21 and 21q22
|OA=1
}}

{{PMID Auto GWAS
|PMID=22399527
|Trait=None
|Title=Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.
|RiskAllele=A
|Pval=2E-8
|OR=0.1500
|ORtxt=None
|OA=1
}}

{{PMID Auto
|PMID=18204098
|Title=Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.
}}

{{PMID Auto
|PMID=18309376
|Title=Several regions in the major histocompatibility complex confer risk for anti-CCP-antibody positive rheumatoid arthritis, independent of the DRB1 locus.
|OA=1
}}

{{PMID Auto
|PMID=19197363
|Title=A genome-wide investigation of SNPs and CNVs in schizophrenia.
|OA=1
}}

{{PMID Auto
|PMID=19853236
|Title=Sequence variants in three loci influence monocyte counts and erythrocyte volume.
|OA=1
}}

{{PMID Auto
|PMID=20017995
|Title=A principal-components-based clustering method to identify multiple variants associated with rheumatoid arthritis and arthritis-related autoantibodies.
|OA=1
}}

{{PMID Auto
|PMID=20437058
|Title=The utility and predictive value of combinations of low penetrance genes for screening and risk prediction of colorectal cancer.
|OA=1
}}

{{PMID Auto
|PMID=24322967
|Title=HCP5 genetic variant (RS3099844) contributes to Nevirapine-induced Stevens Johnsons Syndrome/Toxic Epidermal Necrolysis susceptibility in a population from Mozambique
}}

{{on chip | 23andMe v1}}
{{on chip | 23andMe v2}}
{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | Affy GenomeWide 6}}
{{on chip | FTDNA2}}
{{on chip | FTDNA}}
{{on chip | HumanOmni1Quad}}
{{on chip | Illumina Human 1M}}