{{Rsnum
|rsid=352139
|Gene=TLR9
|Chromosome=3
|position=52224356
|Orientation=minus
|GMAF=0.4729
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(A;A)
|geno2=(A;G)
|geno3=(G;G)
|Gene_s=TLR9
}}{{ population diversity
| geno1=(A;A)
| geno2=(A;G)
| geno3=(G;G)
| CEU | 27.4 | 48.7 | 23.9
| HCB | 34.3 | 50.4 | 15.3
| JPT | 29.2 | 43.4 | 27.4
| YRI | 17.7 | 49.7 | 32.7
| ASW | 16.4 | 49.1 | 34.5
| CHB | 34.3 | 50.4 | 15.3
| CHD | 34.3 | 53.7 | 12.0
| GIH | 33.7 | 42.6 | 23.8
| LWK | 20.9 | 45.5 | 33.6
| MEX | 13.8 | 58.6 | 27.6
| MKK | 21.8 | 42.3 | 35.9
| TSI | 12.9 | 37.6 | 49.5
| HapMapRevision=28
}}{{PMID Auto
|PMID=20044998
|Title=Genetic risk factors for post-infectious irritable bowel syndrome following a waterborne outbreak of gastroenteritis
}}

{{PMID Auto
|PMID=20497632
|Title=Association of TLR9 gene polymorphisms with lupus nephritis in a Chinese Han population
}}
{{PMID Auto
|PMID=20500814
|Title=Toll-like receptor 9 polymorphisms influence mother-to-child transmission of human immunodeficiency virus type 1
|OA=1
}}

{{PMID Auto
|PMID=21633947
|Title=Polymorphisms in the toll-like receptor 9 gene associated with sepsis and multiple organ dysfunction after major blunt trauma
}}

{{PMID Auto
|PMID=22211722
|Title=Association of TLR polymorphisms with development of tuberculosis in Indonesian females.
}}

{{PMID Auto
|PMID=22594374
|Title=Toll-like receptor 9 (TLR9) polymorphism associated with symptomatic malaria: a cohort study
|OA=1
}}

{{PMID Auto
|PMID=18396467
|Title=Genetic variation and haplotype structures of innate immunity genes in eastern India.
|OA=1
}}

{{PMID Auto
|PMID=18776126
|Title=Toll-like receptor 9 affects severity of IgA nephropathy.
|OA=1
}}

{{PMID Auto
|PMID=19034965
|Title=Genetic determination of irritable bowel syndrome.
|OA=1
}}

{{PMID Auto
|PMID=19284650
|Title=TLR9 polymorphisms in African populations: no association with severe malaria, but evidence of cis-variants acting on gene expression.
|OA=1
}}

{{PMID Auto
|PMID=20041166
|Title=Common genetic variation and the control of HIV-1 in humans.
|OA=1
}}

{{PMID Auto
|PMID=20137629
|Title=[Relationship between polymorphism sites of IRF5, TLR-9 and SLE patients in Shandong Han population].
}}

{{PMID Auto
|PMID=21595536
|Title=Investigation of association between TLR9 gene polymorphisms and VKH in Japanese patients.
}}

{{PMID Auto
|PMID=21872627
|Title=Association of polymorphisms in TLR genes and in genes of the Toll-like receptor signaling pathway with cancer risk.
}}

{{PMID Auto
|PMID=22228476
|Title=Lack of association of Toll-like receptor 9 polymorphisms with susceptibility to systemic lupus erythematosus in an Asian population: a meta-analysis.
}}

{{PMID Auto
|PMID=22691414
|Title=Role of polymorphisms of toll-like receptor (TLR) 4, TLR9, toll-interleukin 1 receptor domain containing adaptor protein (TIRAP) and FCGR2A genes in malaria susceptibility and severity in Burundian children
|OA=1
}}

{{PMID Auto
|PMID=23964786
|Title=Toll-like receptor 9 SNPs are susceptible to the development and progression of membranous glomerulonephritis: 27 years follow-up in Taiwan
}}

{{PMID Auto
|PMID=24004541
|Title=Association study of TLR-9 polymorphisms and systemic lupus erythematosus in Northern Chinese Han population
}}

{{PMID Auto
|PMID=24053111
|Title=Variants in toll-like receptor 9 gene influence susceptibility to tuberculosis in a Mexican population
|OA=1
}}

{{PMID Auto
|PMID=22948541
|Title=Contribution of toll-like receptor 9 gene single-nucleotide polymorphism to systemic lupus erythematosus.
|OA=1
}}

{{PMID Auto
|PMID=24971461
|Title=Polymorphisms in the Inflammatory Pathway Genes TLR2, TLR4, TLR9, LY96, NFKBIA, NFKB1, TNFA, TNFRSF1A, IL6R, IL10, IL23R, PTPN22, and PPARG Are Associated with Susceptibility of Inflammatory Bowel Disease in a Danish Cohort
}}
{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | Illumina Human 1M}}