{{Rsnum
|rsid=3765598
|Gene=PTPN22
|Chromosome=1
|position=113851841
|Orientation=plus
|GMAF=0.1593
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(C;C)
|geno2=(C;T)
|geno3=(T;T)
|Gene_s=PTPN22,RP5-1073O3.2
}}{{ population diversity
| geno1=(C;C)
| geno2=(C;T)
| geno3=(T;T)
| CEU | 60.2 | 33.6 | 6.2
| HCB | 63.5 | 32.8 | 3.6
| JPT | 60.2 | 35.4 | 4.4
| YRI | 91.2 | 8.8 | 0.0
| ASW | 87.7 | 12.3 | 0.0
| CHB | 63.5 | 32.8 | 3.6
| CHD | 60.6 | 35.8 | 3.7
| GIH | 88.1 | 11.9 | 0.0
| LWK | 90.9 | 9.1 | 0.0
| MEX | 77.2 | 21.1 | 1.8
| MKK | 78.8 | 17.9 | 3.2
| TSI | 70.6 | 25.5 | 3.9
| HapMapRevision=28
}}{{Report GE
|PubMed=16175503
|Source=17660530
|AffyProbeset=SNP_A-1962697
|AffyOrientation=same
|AlleleA=C
|AlleleB=T
|onGW5=1
|rsid=3765598
|ancestral=C
|RiskPopulation=Caucasian
|RiskAllele=T
|CaseFreq=0.21
|ControlFreq=0.16
|OddsRatioHet=
|OddsRatioHom=
|OddsRatioAll=1.40
|Disease=Rheumatoid Arthritis
|DiseaseSymbol=RA
|OA=1
}}

rs3765598 is in linkage disequilibrium with a polymorphism that increases susceptibility to Rheumatoid Arthritis 1.40 times for carriers of the T allele {{PMID|16175503|OA=1
}}

{{PMID Auto
|PMID=19180477
|Title=Genetic risk factors for rheumatoid arthritis differ in Caucasian and Korean populations.
|OA=1
}}

{{PMID Auto
|PMID=19956096
|Title=rs2476601 T allele (R620W) defines high-risk PTPN22 type I diabetes-associated haplotypes with preliminary evidence for an additional protective haplotype.
|OA=1
}}

{{PMID Auto
|PMID=19956101
|Title=Overview of the Rapid Response data.
|OA=1
}}

{{PMID Auto
|PMID=23950893
|Title=PTPN22 Association in Systemic Lupus Erythematosus (SLE) with Respect to Individual Ancestry and Clinical Sub-Phenotypes
|OA=1
}}

{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | Affy GenomeWide 6}}
{{on chip | Affy500k}}
{{on chip | FTDNA2}}
{{on chip | HumanOmni1Quad}}
{{on chip | Illumina Human 1M}}