{{Rsnum
|rsid=3775261
|Gene=MSX1
|Chromosome=4
|position=4862018
|Orientation=plus
|GMAF=0.3797
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(A;A)
|geno2=(A;C)
|geno3=(C;C)
|Gene_s=MSX1
}}{{ population diversity
| geno1=(A;A)
| geno2=(A;C)
| geno3=(C;C)
| CEU | 7.1 | 31.9 | 61.1
| HCB | 43.1 | 40.9 | 16.1
| JPT | 34.5 | 38.9 | 26.5
| YRI | 6.1 | 38.8 | 55.1
| ASW | 15.8 | 24.6 | 59.6
| CHB | 43.1 | 40.9 | 16.1
| CHD | 44.4 | 43.5 | 12.0
| GIH | 5.9 | 48.5 | 45.5
| LWK | 4.5 | 40.9 | 54.5
| MEX | 32.8 | 46.6 | 20.7
| MKK | 2.6 | 31.2 | 66.2
| TSI | 5.9 | 40.2 | 53.9
| HapMapRevision=28
}}{{PMID Auto
|PMID=20635363
|Title=Parent-of-origin effects for MSX1 in a Chilean population with nonsyndromic cleft lip/palate
}}

{{PMID Auto
|PMID=23231047
|Title=Association Between CDH1 and MSX1 Gene Polymorphisms and the Risk of Nonsyndromic Cleft Lip and/or Cleft Palate in a Southeast Iranian Population
}}

{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | Affy GenomeWide 6}}
{{on chip | FTDNA2}}
{{on chip | HumanOmni1Quad}}