{{Rsnum
|rsid=3792106
|Gene=ATG16L1
|Chromosome=2
|position=233282094
|Orientation=minus
|GMAF=0.4789
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(A;A)
|geno2=(A;G)
|geno3=(G;G)
|Gene_s=ATG16L1
}}{{ population diversity
| geno1=(A;A)
| geno2=(A;G)
| geno3=(G;G)
| CEU | 11.5 | 50.4 | 38.1
| HCB | 39.4 | 45.3 | 15.3
| JPT | 45.1 | 46.9 | 8.0
| YRI | 36.1 | 44.2 | 19.7
| ASW | 29.8 | 50.9 | 19.3
| CHB | 39.4 | 45.3 | 15.3
| CHD | 48.6 | 44.0 | 7.3
| GIH | 10.9 | 47.5 | 41.6
| LWK | 29.1 | 46.4 | 24.5
| MEX | 44.6 | 41.1 | 14.3
| MKK | 23.1 | 57.1 | 19.9
| TSI | 8.8 | 56.9 | 34.3
| HapMapRevision=28
}}{{PMID Auto
|PMID=21618365
|Title=Transmission distortion in Crohn's disease risk gene ATG16L1 leads to sex difference in disease association
|OA=1
}}

{{PMID Auto
|PMID=17068223
|Title=A genome-wide association study identifies IL23R as an inflammatory bowel disease gene.
}}

{{PMID Auto
|PMID=23828458
|Title=Identification of two maternal transmission ratio distortion loci in pedigrees of the Framingham heart study.
|OA=1
}}

{{on chip | 23andMe v1}}
{{on chip | 23andMe v2}}
{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | Affy GenomeWide 6}}
{{on chip | FTDNA2}}
{{on chip | FTDNA}}
{{on chip | HumanOmni1Quad}}
{{on chip | Illumina Human 1M}}