{{Rsnum
|rsid=3821949
|Gene=MSX1
|Chromosome=4
|position=4858675
|Orientation=plus
|GMAF=0.3499
|Gene_s=MSX1
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(A;A)
|geno2=(A;G)
|geno3=(G;G)
}}{{ population diversity
| geno1=(A;A)
| geno2=(A;G)
| geno3=(G;G)
| CEU | 2.7 | 31.0 | 66.4
| HCB | 16.3 | 47.4 | 36.3
| JPT | 19.6 | 42.9 | 37.5
| YRI | 23.4 | 58.6 | 17.9
| ASW | 35.1 | 36.8 | 28.1
| CHB | 16.3 | 47.4 | 36.3
| CHD | 20.4 | 42.6 | 37.0
| GIH | 4.0 | 35.0 | 61.0
| LWK | 33.6 | 42.7 | 23.6
| MEX | 21.1 | 35.1 | 43.9
| MKK | 32.9 | 45.2 | 21.9
| TSI | 3.9 | 27.5 | 68.6
| HapMapRevision=28
}}{{PMID Auto
|PMID=23580168
|Title=Association between MSX1 SNPs and Nonsyndromic Cleft Lip with or without Cleft Palate in the Korean Population
|OA=1
}}

{{PMID Auto
|PMID=24603642
|Title=A miRNA-binding-site SNP of MSX1 is Associated with NSOC Susceptibility
}}

{{PMID Auto
|PMID=20450679
|Title=[Msh homebox-1 polymorphisms and susceptibility to 198 sporadic tooth agenesis: a case-control study].
}}

{{PMID Auto
|PMID=21689018
|Title=Association between MSX1 variants and oral clefts in Han Chinese in western China.
}}

{{on chip | 23andMe v1}}
{{on chip | 23andMe v2}}
{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | FTDNA2}}
{{on chip | HumanOmni1Quad}}
{{on chip | Illumina Human 1M}}