{{Rsnum
|rsid=3825932
|Gene=CTSH
|Chromosome=15
|position=78943104
|Orientation=plus
|GMAF=0.3701
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(C;C)
|geno2=(C;T)
|geno3=(T;T)
|Gene_s=CTSH
}}{{ population diversity
| geno1=(C;C)
| geno2=(C;T)
| geno3=(T;T)
| CEU | 46.9 | 45.1 | 8.0
| HCB | 0.7 | 19.7 | 79.6
| JPT | 1.8 | 14.2 | 84.1
| YRI | 2.0 | 20.4 | 77.6
| ASW | 0.0 | 43.9 | 56.1
| CHB | 0.7 | 19.7 | 79.6
| CHD | 0.9 | 20.6 | 78.5
| GIH | 40.0 | 44.0 | 16.0
| LWK | 5.5 | 36.4 | 58.2
| MEX | 22.4 | 53.4 | 24.1
| MKK | 8.3 | 39.1 | 52.6
| TSI | 36.3 | 43.1 | 20.6
| HapMapRevision=28
}}
{{PMID Auto GWAS
|PMID=18978792
|Trait=Type 1 diabetes
|Title=Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci
|RiskAllele=C
|Pval=2.9999999999999998E-15
|OR=1.16
|ORtxt=[1.10-1.22]
|OA=1
}}

{{PMID Auto GWAS
|PMID=19430480
|Trait=Type 1 diabetes
|Title=Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes
|RiskAllele=
|Pval=8E-8
|OR=NR
|ORtxt=NR
|OA=1
}}

{{omim
|desc=DIABETES MELLITUS, INSULIN-DEPENDENT; IDDM
|id=222100
|rsnum=3825932
}}

{{PharmGKB
|RSID=rs3825932
|Name_s=
|Gene_s=CTSH
|Feature=
|Evidence=PubMed ID:18978792; Web Resource:http://www.genome.gov/gwastudies/
|Annotation=Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci. (Initial Sample Size: 3,561 cases, 4,646 controls; Replication Sample Size: 6,225 cases, 6,946 controls, 3,064 trios); (Region: 15q25.1; Reported Gene: CTSH; Risk Allele: rs3825932-C) This variant is associated with Type 1 diabetes.
|Drugs=
|Drug Classes=
|Diseases=Diabetes Mellitus, Type 1
|Curation Level=Non-Curated
|PharmGKB Accession ID=PA164740870
}}

{{PharmGKB
|RSID=rs3825932
|Name_s=
|Gene_s=CTSH
|Feature=
|Evidence=PubMed ID:18978792; Web Resource:http://www.genome.gov/gwastudies/
|Annotation=GWAS results: Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci. (Initial Sample Size: 3,561 cases, 4,646 controls; Replication Sample Size: 6,225 cases, 6,946 controls, 3,064 trios); (Region: 15q25.1; Reported Gene(s): CTSH; Risk Allele: rs3825932-C); (p-value= 2.99999999999999E-15).This variant is associated with Type 1 diabetes.
|Drugs=
|Drug Classes=
|Diseases=Diabetes Mellitus; Diabetes Mellitus, Type 1
|Curation Level=Non-Curated
|PharmGKB Accession ID=PA164740751
}}

{{PMID Auto
|PMID=19073967
|Title=Shared and distinct genetic variants in type 1 diabetes and celiac disease.
|OA=1
}}

{{PMID Auto
|PMID=20369022
|Title=Candidate causal regulatory effects by integration of expression QTLs with complex trait genetic associations.
|OA=1
}}

{{GET Evidence
|impact=pathogenic
|qualified_impact=Insufficiently evaluated pathogenic
|inheritance=unknown
|quality_scores=Array
|dbsnp_id=rs3825932
|overall_frequency_n=49
|overall_frequency_d=128
|overall_frequency=0.382812
|n_genomes=30
|n_genomes_annotated=0
|n_haplomes=42
|n_articles=0
|n_articles_annotated=0
|in_gwas=Y
|in_pharmgkb=Y
|autoscore=2
|webscore=N
}}

{{PMID Auto
|PMID=24982147
|Title=CTSH regulates β-cell function and disease progression in newly diagnosed type 1 diabetes patients
}}
{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | Affy GenomeWide 6}}
{{on chip | HumanOmni1Quad}}
{{on chip | Illumina Human 1M}}