{{Rsnum
|rsid=3828309
|Gene=ATG16L1
|Chromosome=2
|position=233271764
|Orientation=minus
|GMAF=0.3742
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(C;C)
|geno2=(C;T)
|geno3=(T;T)
|Gene_s=ATG16L1
}}{{ population diversity
| geno1=(C;C)
| geno2=(C;T)
| geno3=(T;T)
| CEU | 29.5 | 55.4 | 15.2
| HCB | 13.9 | 44.5 | 41.6
| JPT | 3.5 | 37.2 | 59.3
| YRI | 3.4 | 35.4 | 61.2
| ASW | 3.5 | 38.6 | 57.9
| CHB | 13.9 | 44.5 | 41.6
| CHD | 4.6 | 37.6 | 57.8
| GIH | 24.0 | 48.0 | 28.0
| LWK | 2.8 | 24.1 | 73.1
| MEX | 12.1 | 34.5 | 53.4
| MKK | 4.5 | 39.7 | 55.8
| TSI | 24.5 | 60.8 | 14.7
| HapMapRevision=28
}}{{PMID Auto GWAS
|PMID=18587394
|Trait=Crohn's disease
|Title=Genome-wide assocation defines more than 30 distinct susceptibility loci for Crohn's disease
|RiskAllele=G
|Pval=2.0000000000000001E-32
|OR=1.25
|ORtxt=[NR]
|OA=1
}}

{{omim
|desc=INFLAMMATORY BOWEL DISEASE 10; IBD10
|id=611081
|rsnum=3828309
}}

{{PMID Auto
|PMID=19557189
|Title=Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions.
|OA=1
}}

{{PMID Auto
|PMID=21304977
|Title=An investigation of genome-wide studies reported susceptibility loci for ulcerative colitis shows limited replication in north Indians.
|OA=1
}}

{{GET Evidence
|impact=pathogenic
|qualified_impact=Insufficiently evaluated pathogenic
|inheritance=unknown
|quality_scores=Array
|dbsnp_id=rs3828309
|overall_frequency_n=42
|overall_frequency_d=128
|overall_frequency=0.328125
|n_genomes=29
|n_genomes_annotated=0
|n_haplomes=35
|n_articles=0
|n_articles_annotated=0
|in_gwas=Y
|autoscore=1
|webscore=N
}}

{{PMID Auto
|PMID=23725363
|Title=Predicting complicated Crohn's disease and surgery: phenotypes, genetics, serology and psychological characteristics of a population-based cohort.
}}

{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | Affy GenomeWide 6}}
{{on chip | HumanOmni1Quad}}