{{Rsnum
|rsid=4464513
|Gene=MSX1
|Chromosome=4
|position=4865595
|Orientation=plus
|GMAF=0.3655
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(G;G)
|geno2=(G;T)
|geno3=(T;T)
}}{{ population diversity
| geno1=(G;G)
| geno2=(G;T)
| geno3=(T;T)
| CEU | 19.5 | 54.0 | 26.5
| HCB | 50.4 | 38.7 | 10.9
| JPT | 44.2 | 35.4 | 20.4
| YRI | 55.8 | 40.1 | 4.1
| ASW | 64.9 | 31.6 | 3.5
| CHB | 50.4 | 38.7 | 10.9
| CHD | 45.0 | 43.1 | 11.9
| GIH | 25.7 | 51.5 | 22.8
| LWK | 60.0 | 35.5 | 4.5
| MEX | 55.2 | 34.5 | 10.3
| MKK | 65.2 | 32.3 | 2.6
| TSI | 28.4 | 46.1 | 25.5
| HapMapRevision=28
}}{{PMID Auto
|PMID=23580168
|Title=Association between MSX1 SNPs and Nonsyndromic Cleft Lip with or without Cleft Palate in the Korean Population
|OA=1
}}

{{PMID Auto
|PMID=24603642
|Title=A miRNA-binding-site SNP of MSX1 is Associated with NSOC Susceptibility
}}
{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | Affy GenomeWide 6}}
{{on chip | FTDNA2}}
{{on chip | HumanOmni1Quad}}