{{Rsnum
|rsid=478582
|Gene=PTPN2
|Chromosome=18
|position=12835977
|Orientation=plus
|GMAF=0.3003
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(C;C)
|geno2=(C;T)
|geno3=(T;T)
|Gene_s=PTPN2
}}{{ population diversity
| geno1=(C;C)
| geno2=(C;T)
| geno3=(T;T)
| CEU | 18.8 | 54.5 | 26.8
| HCB | 5.2 | 26.1 | 68.7
| JPT | 2.7 | 26.8 | 70.5
| YRI | 0.0 | 19.2 | 80.8
| ASW | 5.3 | 21.1 | 73.7
| CHB | 5.2 | 26.1 | 68.7
| CHD | 5.5 | 19.3 | 75.2
| GIH | 2.0 | 33.7 | 64.4
| LWK | 0.9 | 13.8 | 85.3
| MEX | 19.3 | 54.4 | 26.3
| MKK | 1.9 | 18.2 | 79.9
| TSI | 17.2 | 57.6 | 25.3
| HapMapRevision=28
}}{{PMID Auto
|PMID=19951419
|Title=Confirmation of the genetic association of CTLA4 and PTPN22 with ANCA-associated vasculitis
|OA=1
}}

{{PMID Auto
|PMID=21246196
|Title=A polymorphism in PTPN2 gene is associated with an earlier onset of type 1 diabetes
}}

{{PMID Auto
|PMID=17554260
|Title=Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.
|OA=1
}}

{{PMID Auto
|PMID=18987646
|Title=The expanding genetic overlap between multiple sclerosis and type I diabetes.
|OA=1
}}

{{PMID Auto
|PMID=19073967
|Title=Shared and distinct genetic variants in type 1 diabetes and celiac disease.
|OA=1
}}

{{PMID Auto
|PMID=22960018
|Title=Investigation of the vitamin D receptor gene (VDR) and its interaction with protein tyrosine phosphatase, non-receptor type 2 gene (PTPN2) on risk of islet autoimmunity and type 1 diabetes: the Diabetes Autoimmunity Study in the Young (DAISY).
|OA=1
}}

{{on chip | 23andMe v1}}
{{on chip | 23andMe v2}}
{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | FTDNA2}}
{{on chip | HumanOmni1Quad}}
{{on chip | Illumina Human 1M}}