{{Rsnum
|rsid=6017342
|Chromosome=20
|position=44436388
|Orientation=plus
|GMAF=0.2906
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(A;A)
|geno2=(A;C)
|geno3=(C;C)
}}{{ population diversity
| geno1=(A;A)
| geno2=(A;C)
| geno3=(C;C)
| CEU | 17.7 | 52.2 | 30.1
| HCB | 0.7 | 27.0 | 72.3
| JPT | 0.0 | 8.9 | 91.1
| YRI | 2.0 | 35.4 | 62.6
| ASW | 1.8 | 36.8 | 61.4
| CHB | 0.7 | 27.0 | 72.3
| CHD | 0.9 | 17.8 | 81.3
| GIH | 20.0 | 40.0 | 40.0
| LWK | 1.8 | 30.3 | 67.9
| MEX | 6.9 | 44.8 | 48.3
| MKK | 3.9 | 28.6 | 67.5
| TSI | 23.5 | 45.9 | 30.6
| HapMapRevision=28
}}{{PMID Auto GWAS
|PMID=19915572
|Trait=Ulcerative colitis
|Title=Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region
|RiskAllele=C
|Pval=9E-17
|OR=1.17
|ORtxt=[1.09-1.26]
|OA=1
}}

{{omim
|id=612566
|rsnum=6017342
}}

{{PMID Auto GWAS
|PMID=21297633
|Trait=None
|Title=Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47
|RiskAllele=C
|Pval=1E-20
|OR=1.2000
|ORtxt=[1.15-1.26]
|OA=1
}}

{{PMID Auto
|PMID=21744425
|Title=HNF4? and CDH1 are associated with ulcerative colitis in a Dutch cohort
}}

{{PMID Auto
|PMID=21831733
|Title=Association of FCGR2A, JAK2 or HNF4A variants with ulcerative colitis in Koreans.
}}

{{GET Evidence
|impact=pathogenic
|qualified_impact=Insufficiently evaluated pathogenic
|inheritance=unknown
|quality_scores=Array
|dbsnp_id=rs6017342
|overall_frequency_n=94
|overall_frequency_d=126
|overall_frequency=0.746032
|n_genomes=49
|n_genomes_annotated=0
|n_haplomes=77
|n_articles=0
|n_articles_annotated=0
|in_gwas=Y
|autoscore=1
|webscore=N
}}

{{PMID Auto GWAS
  |PMID=23128233
  |Trait=Ulcerative colitis
  |Title=Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
  |RiskAllele=C
  |Pval=1E-43
  |OR=1.23
  |ORtxt=[1.185-1.273]
  |OA=1
}}

{{on chip | 23andMe v1}}
{{on chip | 23andMe v2}}
{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | Affy GenomeWide 6}}
{{on chip | HumanOmni1Quad}}
{{on chip | Illumina Human 1M}}