{{Rsnum
|rsid=6426833
|Chromosome=1
|position=19845367
|Orientation=plus
|GMAF=0.4362
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(A;A)
|geno2=(A;G)
|geno3=(G;G)
}}{{ population diversity
| geno1=(A;A)
| geno2=(A;G)
| geno3=(G;G)
| CEU | 23.9 | 54.0 | 22.1
| HCB | 48.9 | 40.1 | 10.9
| JPT | 64.6 | 30.1 | 5.3
| YRI | 16.3 | 53.7 | 29.9
| ASW | 14.0 | 50.9 | 35.1
| CHB | 48.9 | 40.1 | 10.9
| CHD | 49.5 | 46.8 | 3.7
| GIH | 43.6 | 42.6 | 13.9
| LWK | 28.2 | 51.8 | 20.0
| MEX | 24.1 | 53.4 | 22.4
| MKK | 41.0 | 43.6 | 15.4
| TSI | 28.4 | 51.0 | 20.6
| HapMapRevision=28
}}A genome-wide association study using DNA samples from 1,052 individuals with [[ulcerative colitis]] and preexisting data from 2,571 controls, all of European ancestry, concluded that this SNP and several others were associated with altered risk for the disease.{{PMID|19122664|OA=1
}}

{{omim
|desc=INFLAMMATORY BOWEL DISEASE 7; IBD7
|id=605225
|rsnum=6426833
}}

{{PharmGKB
|RSID=rs6426833
|Name_s=
|Gene_s=-
|Feature=
|Evidence=PubMed ID:19122664; Web Resource:http://www.genome.gov/gwastudies/
|Annotation=GWAS results: Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study. (Initial Sample Size: 1,022 cases, 2,503 controls; Replication Sample Size: 1,387 cases, 1,115 controls); (Region: 1p36.13; Reported Gene(s): OTUD3, PLA2G2E; Risk Allele: rs6426833-G); (p-value= 0.0000000000005).This variant is associated with Ulcerative colitis.
|Drugs=
|Drug Classes=
|Diseases=Colitis, Ulcerative
|Curation Level=Non-Curated
|PharmGKB Accession ID=PA164740080
}}
{{PMID Auto GWAS
|PMID=19915572
|Trait=Ulcerative colitis
|Title=Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region
|RiskAllele=
|Pval=2E-11
|OR=NR
|ORtxt=NR
|OA=1
}}

{{PMID Auto GWAS
|PMID=20228799
|Trait=Ulcerative colitis
|Title=Genome-wide association identifies multiple ulcerative colitis susceptibility loci
|RiskAllele=A
|Pval=2E-21
|OR=1.30
|ORtxt=[NR]
|OA=1
}}

{{PMID Auto GWAS
|PMID=21297633
|Trait=None
|Title=Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47
|RiskAllele=A
|Pval=4E-35
|OR=1.3000
|ORtxt=[1.25-1.35]
|OA=1
}}

{{PMID Auto
|PMID=21304977
|Title=An investigation of genome-wide studies reported susceptibility loci for ulcerative colitis shows limited replication in north Indians.
|OA=1
}}

{{GET Evidence
|impact=pathogenic
|qualified_impact=Insufficiently evaluated pathogenic
|inheritance=unknown
|quality_scores=Array
|dbsnp_id=rs6426833
|overall_frequency_n=72
|overall_frequency_d=128
|overall_frequency=0.5625
|n_genomes=45
|n_genomes_annotated=0
|n_haplomes=62
|n_articles=0
|n_articles_annotated=0
|in_gwas=Y
|in_pharmgkb=Y
|autoscore=2
|webscore=N
}}

{{PMID Auto GWAS
  |PMID=23128233
  |Trait=Ulcerative colitis
  |Title=Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
  |RiskAllele=A
  |Pval=2E-68
  |OR=1.27
  |ORtxt=[1.221-1.31]
  |OA=1
}}

{{on chip | 23andMe v1}}
{{on chip | 23andMe v2}}
{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | Affy GenomeWide 6}}
{{on chip | HumanOmni1Quad}}
{{on chip | Illumina Human 1M}}