{{Rsnum
|rsid=7234029
|Gene=PTPN2
|Chromosome=18
|position=12877061
|Orientation=plus
|GMAF=0.2856
|Gene_s=PTPN2
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(A;A)
|geno2=(A;G)
|geno3=(G;G)
}}{{ population diversity
| geno1=(A;A)
| geno2=(A;G)
| geno3=(G;G)
| CEU | 81.4 | 15.9 | 2.7
| HCB | 49.6 | 42.3 | 8.0
| JPT | 37.2 | 45.1 | 17.7
| YRI | 15.6 | 49.0 | 35.4
| ASW | 24.6 | 49.1 | 26.3
| CHB | 49.6 | 42.3 | 8.0
| CHD | 54.1 | 37.6 | 8.3
| GIH | 71.3 | 25.7 | 3.0
| LWK | 19.1 | 50.0 | 30.9
| MEX | 74.1 | 24.1 | 1.7
| MKK | 23.2 | 51.6 | 25.2
| TSI | 76.5 | 21.6 | 2.0
| HapMapRevision=28
}}{{PMID Auto
|PMID=24127071
|Title=Associations between PTPN2 polymorphisms and susceptibility to ulcerative colitis and Crohn's disease: a meta-analysis
}}

{{PMID Auto
|PMID=24480412
|Title=PTPN2 rs1893217 single-nucleotide polymorphism is associated with risk of Behçet's disease in a Chinese Han population
}}

{{PMID Auto
|PMID=20722033
|Title=The susceptibility loci juvenile idiopathic arthritis shares with other autoimmune diseases extend to PTPN2, COG6, and ANGPT1.
|OA=1
}}

{{PMID Auto
|PMID=22328738
|Title=Comprehensive assessment of rheumatoid arthritis susceptibility loci in a large psoriatic arthritis cohort.
|OA=1
}}

{{PMID Auto
|PMID=23777930
|Title=Investigation of juvenile idiopathic arthritis susceptibility loci: results from a Greek population.
}}

{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | Affy GenomeWide 6}}
{{on chip | Illumina Human 1M}}