{{Rsnum
|rsid=9292777
|Chromosome=5
|position=40437846
|Orientation=plus
|GMAF=0.4738
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(C;C)
|geno2=(C;T)
|geno3=(T;T)
}}{{ population diversity
| geno1=(C;C)
| geno2=(C;T)
| geno3=(T;T)
| CEU | 9.9 | 50.5 | 39.6
| HCB | 73.5 | 22.1 | 4.4
| JPT | 73.2 | 25.9 | 0.9
| YRI | 11.6 | 42.2 | 46.3
| ASW | 14.0 | 47.4 | 38.6
| CHB | 73.5 | 22.1 | 4.4
| CHD | 69.8 | 29.2 | 0.9
| GIH | 35.4 | 43.4 | 21.2
| LWK | 7.3 | 35.5 | 57.3
| MEX | 24.6 | 50.9 | 24.6
| MKK | 0.0 | 0.0 | 0.0
| TSI | 16.0 | 55.0 | 29.0
| HapMapRevision=28
}}{{Report GE
|PubMed=17447842
|Source=pubmed
|AffyProbeset=SNP_A-2211129
|AffyOrientation=same
|AlleleA=C
|AlleleB=T
|onGW5=1
|rsid=9292777
|ancestral=C
|RiskPopulation=EU
|RiskAllele=T
|CaseFreq=0.68
|ControlFreq=0.59
|OddsRatioHet=
|OddsRatioHom=
|OddsRatioAll=1.46
|Disease=Crohn's disease
|DiseaseSymbol=CD
|OA=1
}}

rs9292777 is in linkage disequilibrium with a polymorphism that increases susceptibility to Crohn's disease 1.46 times for carriers of the T allele {{PMID|17447842|OA=1
}}

{{PMID Auto GWAS
|PMID=17554261
|Trait=Crohn's disease
|Title=Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility
|RiskAllele=
|Pval=2.9999999999999998E-18
|OR=1.34
|ORtxt=[1.20-1.50]
|OA=1
}}

{{PMID Auto
|PMID=19953089
|Title=Differences in genetic background between active smokers, passive smokers, and non-smokers with Crohn's disease
}}

{{PMID Auto GWAS
|PMID=22570697
|Trait=None
|Title=Genome-wide association study of multiple sclerosis confirms a novel locus at 5p13.1.
|RiskAllele=T
|Pval=1E-9
|OR=1.1900
|ORtxt=None
|OA=1
}}

{{PMID Auto GWAS
|PMID=22412388
|Trait=None
|Title=A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.
|RiskAllele=T
|Pval=2E-11
|OR=1.3700
|ORtxt=None
|OA=1
}}

{{PMID Auto
|PMID=18438406
|Title=Genetic determinants of ulcerative colitis include the ECM1 locus and five loci implicated in Crohn's disease.
|OA=1
}}

{{PMID Auto
|PMID=19140132
|Title=Unbiased estimation of odds ratios: combining genomewide association scans with replication studies.
|OA=1
}}

{{GET Evidence
|impact=pathogenic
|qualified_impact=Insufficiently evaluated pathogenic
|inheritance=unknown
|quality_scores=Array
|dbsnp_id=rs9292777
|overall_frequency_n=74
|overall_frequency_d=128
|overall_frequency=0.578125
|n_genomes=39
|n_genomes_annotated=0
|n_haplomes=60
|n_articles=0
|n_articles_annotated=0
|in_gwas=Y
|autoscore=1
|webscore=N
}}

{{on chip | 23andMe v2}}
{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | Affy GenomeWide 6}}
{{on chip | Affy500k}}
{{on chip | HumanOmni1Quad}}