{{Rsnum
|rsid=9940128
|Gene=FTO
|Chromosome=16
|position=53766842
|Orientation=plus
|GMAF=0.3508
|Assembly=GRCh38
|GenomeBuild=38.1
|dbSNPBuild=141
|geno1=(A;A)
|geno2=(A;G)
|geno3=(G;G)
|Gene_s=FTO
}}{{ population diversity
| geno1=(A;A)
| geno2=(A;G)
| geno3=(G;G)
| CEU | 21.4 | 54.5 | 24.1
| HCB | 4.4 | 27.9 | 67.6
| JPT | 3.5 | 38.9 | 57.5
| YRI | 24.5 | 41.5 | 34.0
| ASW | 19.6 | 57.1 | 23.2
| CHB | 4.4 | 27.9 | 67.6
| CHD | 4.6 | 32.4 | 63.0
| GIH | 8.9 | 50.5 | 40.6
| LWK | 12.7 | 47.3 | 40.0
| MEX | 1.8 | 44.6 | 53.6
| MKK | 18.1 | 58.1 | 23.9
| TSI | 27.5 | 44.1 | 28.4
| HapMapRevision=28
}}

This SNP is in a linkage block in the [[FTO]] gene with [[rs1121980]]; see [[rs1121980]] for the association of this block with early onset [[obesity]] since it showed the strongest association.{{PMID|18159244|OA=1
}}

{{ neighbor
| rsid = 9939973
| distance = 186
}}
{{ neighbor
| rsid = 1421085
| distance = 200
}}

{{PMID Auto GWAS
|PMID=22399527
|Trait=None
|Title=Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.
|RiskAllele=A
|Pval=2E-9
|OR=0.0900
|ORtxt=None
|OA=1
}}

{{PMID Auto
|PMID=18379722
|Title=Variations in the FTO gene are associated with severe obesity in the Japanese.
|OA=1
}}

{{PMID Auto
|PMID=18599522
|Title=FTO variants are associated with obesity in the Chinese and Malay populations in Singapore.
|OA=1
}}

{{PMID Auto
|PMID=20017965
|Title=Identifying association under a previous linkage peak on chromosome 16 for body mass index using cross-sectional and longitudinal data of the Framingham Heart Study.
|OA=1
}}

{{PMID Auto
|PMID=21175269
|Title=Genetic variations in the FTO gene are associated with type 2 diabetes and obesity in south Indians (CURES-79).
}}

{{PMID Auto GWAS
  |PMID=23669352
  |Trait=Body mass index
  |Title=Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.
  |RiskAllele=A
  |Pval=4E-23
  |OR=.08
  |ORtxt=[0.067-0.099] unit increase
  }}

{{on chip | 23andMe v3}}
{{on chip | 23andMe v4}}
{{on chip | Affy GenomeWide 6}}
{{on chip | FTDNA2}}
{{on chip | FTDNA}}
{{on chip | HumanOmni1Quad}}